使用例
ピークコール
macs2 callpeak -c ctrl.bam -t target.bam -g mm -p 1e-5 -f BAM -B -n prefix --outdir outDir
# -c: control (if needed)
# -t: target
# -p: threshold (p < 10^-5)
# -q: threshold (q-val) FDR-BH
# -g: species, mm (=mouse), hs (=human)
# -n: Exp_name
# -B: bigBed file output
# --outdir
OUTPUT
| *_model.r
| estimated DNA flagment length
|
| *_peaks.narrowPeak
| peak region
|
| *_peaks.xls
| peak region
|
| *_summits.bed
| summit of peak
|
| *_treat_pileup.bdg
| read coverage of ChIP data
|
| *_lambda.bdg
| local bias of read coverage of control data
|
参考文献